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COMER results

Results for d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}, input was a sequence (fasta).

Results summary

Results table

No.IDDescriptionP-valueE-valueScore (bit-score)Aln. length
1d2p62a1d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}1.1e-431.1e-43224 (173)253
2d1t6t1_d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex aeolicus [TaxId: 63363]}0.0130.01334 (36)121
3d2fcja1d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]}0.0450.04633 (34)115
4d3vdpa_d3vdpa_ e.49.1.1 (A:) Recombination protein RecR {Thermoanaerobacter tengcongensis [TaxId: 273068]}0.671.129 (30)165
5d5vaza_d5vaza_ e.13.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}0.882.128 (29)114
6d1gkub3d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}0.922.529 (29)24
7d1dd9a_d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}0.973.527 (28)114
8d1jr3d2d1jr3d2 c.37.1.20 (D:1-211) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}16.925 (27)145

Alignments

1 d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}

Length/ENO: Query=241/9.0, Target=241/9.0

P-value=1.1e-43, E-value=1.1e-43, Score=223.89(172.6 bits), Identities=207/253 (82%), Positives=22/253 (9%), Gaps=24/253 (9%).

Query_SS eeeeeee hhhhhhhhhhhh eeeee eeeeee hhhhhhhhhh Query 1 MRIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLD 80 MRIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLD d2p62a1 1 MRIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLD 80 d2p62a1_SS eeeeee hhhhhhhhhhhhh hhhh eeeeee hhhhhhhhh Query_SS hhh eeeeeee hhhhhhhhhhhhh ee eeeee Query 81 SVKLGLLNVEEVYVVRDVDEGNDVFEWVLSFLREREVRVDNGAIVTEGVKIYPYGMGNLTLNEPFVKE-----------K 149 SVKLGLLNVEEVYVVRDVDEGNDVFEWVLSFLREREVRVDNG ++V++++++ +P++++ K d2p62a1 81 SVKLGLLNVEEVYVVRDVDEGNDVFEWVLSFLREREVRVDNG----AIVTEGVKI-------YPYGMGNLTLNEPFVKEK 149 d2p62a1_SS hhhh eeeeeee hhhhhhhhhhhh eeee ee eee Query_SS hhhhhhhhhh hhhhhhhhhhhhhhh h hhhhhhhhhh hhhhhhhh hhhhhhhh Query 150 KELELSLAYLAKLDGILEKYRGSMRALSQDKGDKLTP-KDVMHILSIANDYTGDCLSGLYEKYIGIMIHRNRELLIRFLS 228 KELELSLAYLAKLDGILEKYRGSMRALSQDKGDKLTP +++++++++ NDYTGDCLSGLYEKYIGIMIHRNRELLIRFLS d2p62a1 150 KELELSLAYLAKLDGILEKYRGSMRALSQDKGDKLTPKDVMHILSIA-NDYTGDCLSGLYEKYIGIMIHRNRELLIRFLS 228 d2p62a1_SS hhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhh Query_SS h hhhhhhhh Query 229 EVNLLPLLERMVG 241 EVNLLPLLERMVG d2p62a1 229 EVNLLPLLERMVG 241 d2p62a1_SS h hhhhhhh
KLambda
Computed ungapped0.15411.2072
Estimated gapped0.00200.6068

2 d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex aeolicus [TaxId: 63363]}

Length/ENO: Query=241/9.0, Target=108/11.0

P-value=0.013, E-value=0.013, Score=34.36(36.2 bits), Identities=19/121 (16%), Positives=51/121 (42%), Gaps=46/121 (38%).

Query_SS eeeeeee hhhhhhhhhhhh eeeee eeeeee hhhhhhhhhhh Query 2 RIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDS 81 R+++I+VEGK D++ ++ + + ++ ++I ++GK R+++V++++ d1t6t1_ 16 REAVILVEGKNDKKALS---K-F-SI--------------------------------KNVIDLSGK-RYADVVDML--- 54 d1t6t1__SS eeeee hhhhh h h eeee hhhhhhhh Query_SS hh eeeeeee hh hhhhhhhhhhh Query 82 VKLGLLNVEEVYVVRDVDEGNDV-FEWVLSFLREREVRVDN 121 + +++E+V++++D+D++ ++ +++++++L++++++VD+ d1t6t1_ 55 -E---GKWEKVILLFDLDTHGERINQKMKELLSSQGFLVDE 91 d1t6t1__SS h eeeeeee hhhhhhhhhhhhh h
KLambda
Computed ungapped0.15581.3901
Estimated gapped0.00200.6988

3 d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]}

Length/ENO: Query=241/9.0, Target=114/11.0

P-value=0.045, E-value=0.046, Score=33.16(34.3 bits), Identities=19/115 (17%), Positives=41/115 (36%), Gaps=42/115 (37%).

Query_SS eeeeeee hhhhhhhhhhhh eeeee eeeeee hhhhhhhhhh Query 1 MRIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLD 80 + +K+IIVEG+ D++ ++++L + +VI++++G I ++ ++L+ d2fcja1 3 RVEKVIIVEGRSDKQKVAAVLNE-----------------------------------PVVIVCTNGT--ISDARLEELA 45 d2fcja1_SS eeeeee hhhhhhhh eeeee hhhhhhhh Query_SS hhh eeeeeee hh hhhhhhhhhh Query 81 SVKLGLLNVEEVYVVRDVDEGNDV-FEWVLSFLRE 114 +++ ++++VY+++D DE ++ ++++++++E d2fcja1 46 DEL----EGYDVYLLADADEAGEKLRRQFRRMFPE 76 d2fcja1_SS hh eeeeee hhhhhhhhhhhh
KLambda
Computed ungapped0.16901.4371
Estimated gapped0.00220.7224

4 d3vdpa_ e.49.1.1 (A:) Recombination protein RecR {Thermoanaerobacter tengcongensis [TaxId: 273068]}

Length/ENO: Query=241/9.0, Target=197/8.0

P-value=0.67, E-value=1.1, Score=29(29.7 bits), Identities=23/165 (14%), Positives=61/165 (37%), Gaps=56/165 (34%).

Query_SS eeeeeee hhhhhhhhhhhh eeeee eeeeee hhhhhhhhhhh Query 2 RIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDS 81 ++++++V+ ++D++ ++++ E+ G +++ +++ I + EG++ + +K++L+ d3vdpa_ 78 HSTICVVSHPMDVVAMEKVKEYK-GV------------------------YHVLHGV---ISPIEGVGPEDIRIKELLER 129 d3vdpa__SS eeeeee hhhhhhhhh e eeee hhhhhhh Query_SS hh eeeeeee hh hhhhhhhhhhh ee eeeee hhh hh Query 82 VKLGLLNVEEVYVVRDVDEGNDV-FEWVLSFLREREVRVDNGAIVTEGVKIYPYGMGNLTLNEPFVKEKKELE-----LS 155 V+ G +V+EV+++++ D + ++ + ++++L++++ VK+ + +G +P + ++LE + d3vdpa_ 130 VRDG--SVKEVILATNPDIEGEATAMYIAKLLKPFG------------VKVTRIAHG-----IPVG---GDLEYTDVVTL 187 d3vdpa__SS hh eeeeeee hhhhhhhhhhhhh eeeeee hhhh Query_SS hhhhh Query 156 LAYLA 160 ++L+ d3vdpa_ 188 SKALE 192 d3vdpa__SS hhhhh
KLambda
Computed ungapped0.17551.2395
Estimated gapped0.00230.6231

5 d5vaza_ e.13.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}

Length/ENO: Query=241/9.0, Target=320/11.0

P-value=0.88, E-value=2.1, Score=28.48(28.8 bits), Identities=11/114 (10%), Positives=46/114 (40%), Gaps=45/114 (39%).

Query_SS eeeeeee hhhhhhhhhhhh eeeee eeeeee hhhhhhhhhhh Query 2 RIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDS 81 +++++VEG D++ ++++ G+ +++ ++G ++ ++ +K +++ d5vaza_ 148 LDEIMVVEGYMDVIALAQQ-----GI--------------------------------RNAVATLGTATSEEHIKRLFRL 190 d5vaza__SS eeeee hhhhhhhhhh eee hhhhhhhh Query_SS hh eeeeeee hh hhhhhhhhhh Query 82 VKLGLLNVEEVYVVRDVDEGNDV-FEWVLSFLRE 114 V+++++++D+D++ ++ ++++L+++++ d5vaza_ 191 -------VPSILFCFDGDQAGRKAAWRALESVLP 217 d5vaza__SS eeeeee hhhhhhhhhhh
KLambda
Computed ungapped0.14381.3700
Estimated gapped0.00180.6887

6 d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}

Length/ENO: Query=241/9.0, Target=556/9.0

P-value=0.92, E-value=2.5, Score=28.52(28.6 bits), Identities=6/24 (25%), Positives=14/24 (58%), Gaps=0/24 (0%).

Query_SS eeeeeee hhhhhhhhhhhh Query 1 MRIKLIIVEGKTDESFFKVLLEKL 24 ++++L+IVE +T ++ +++++ K+ d1gkub3 6 IKPALFIVESPTKARQISRFFGKP 29 d1gkub3_SS eeeeee hhhhhhhhhhh
KLambda
Computed ungapped0.15351.4315
Estimated gapped0.00200.7196

7 d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}

Length/ENO: Query=241/9.0, Target=314/11.0

P-value=0.97, E-value=3.5, Score=27.47(28.1 bits), Identities=11/114 (10%), Positives=47/114 (41%), Gaps=45/114 (39%).

Query_SS eeeeeee hhhhhhhhhhhh eeeee eeeeee hhhhhhhhhhh Query 2 RIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDS 81 ++L++VEG D++ ++++ G++ +++ ++G ++ ++ ++++++ d1dd9a_ 144 PNRLLVVEGYMDVVALAQY-----GIN--------------------------------YAVASLGTSTTADHIQLLFR- 185 d1dd9a__SS eeeeee hhhhhhhhh eeee hhhhhhhh Query_SS hh eeeeeee hh hhhhhhhhhh Query 82 VKLGLLNVEEVYVVRDVDEGNDV-FEWVLSFLRE 114 +++V++++D+D++ ++ +++L+++++ d1dd9a_ 186 ------ATNNVICCYDGDRAGRDAAWRALETALP 213 d1dd9a__SS eeeeee hhhhhhhhhhhhh
KLambda
Computed ungapped0.14831.4316
Estimated gapped0.00190.7197

8 d1jr3d2 c.37.1.20 (D:1-211) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

Length/ENO: Query=241/9.0, Target=211/12.0

P-value=1, E-value=6.9, Score=25.41(27.1 bits), Identities=9/145 (6%), Positives=90/145 (62%), Gaps=30/145 (21%).

Query_SS eeeee hhhhhhhhhhhhh eeeeeee hhhhhhhhhhhhh ee eeeee Query 60 LVIIHAEGKQRIPKVLKSVLDSVKLGLLNVEEVYVVRDVDEGN--DVFEWVLSFLREREVRVDNGAIVTEGVKIYPYGMG 137 +++++++++++++++++++ ++++L+ + +++++++++++G+ + +E++L+++++ ++ ++++ d1jr3d2 50 HHTFSIDPNTDWNAIFSLC-QAMSLF--ASRQTLLLLLPENGPNAAINEQLLTLTGLLHD------------DLLLIVR- 113 d1jr3d2_SS eeee hhhhhhhh hhhh eeeee hhhhhhhhhhh eeeeee Query_SS hhhhhhhhhh hhhhhhhhhhhhhhh hhhhhhhhhh Query 138 NLTLNEPFVKEKKELELSLAYLAK-------LDGILEKYRGSMRALSQDKGDKLTPKDVMHILSI 195 ++++++ E+ ++++LA+ +++ + ++++++A+ ++++ +L+++ +++++++ d1jr3d2 114 -----GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 d1jr3d2_SS hhhhhhhhh eeeee hhhhhhhhhhh hhhhhhhhhh
KLambda
Computed ungapped0.17511.4029
Estimated gapped0.00230.7052