Overview

Example job EXAMPLE allows to query contacts of a homo-dimeric protein structure.

Below are query examples, done with EXAMPLE job, presented as screenshots of the query page and screenshots of the corresponding WebGL-based visualization. The altered query form fields are marked with red asterisks.

1) Contacts between chain A and B

2) Contacts between residues in different chains, filtered by area

3) Contacts between the chain A residue 73 and any atoms of the chain B

4) Contacts between the chain A residue 73 and the chain B residue 73

5) All contacts of the side-chain atoms of the chain A residue 73

6) Randomly colored all contacts of the side-chain atoms of the chain A residue 73

7) Randomly colored inter-chain contacts between residues, excluding residues 35 and 73

8) Salt bridges involving the atoms of the residue 73 in both chains

9) Randomly colored all contacts of the atom OE1 of the chain A glutamic acid residue number 15

10) Solvent contacts of the atoms of lysine residues with sequnce numbers between 50 and 60 in chain A