{"comer_search": { "program": "comer", "version": "2.03.03", "references": [ "Margelevicius, M. (2020). COMER2: GPU-accelerated sensitive and specific homology searches. Bioinformatics 36, 3570-3572.", "Margelevicius, M. (2016). Bayesian nonparametrics in protein remote homology search. Bioinformatics 32, 2744-2752." ], "query": { "length": 105, "name": "", "description": "7M1W NMR structure of the Human T-cell leukemia virus 1 matrix protein (MSA in aligned FASTA format)" }, "database": { "names": [ "swissprot90_2022_03", "pdb70_220717" ], "number_of_profiles": 390907, "number_of_positions": 143238575 }, "message": "Profiles found below the e-value threshold:", "search_summary": [ {"summary_entry": { "description": "7M1W_A Matrix protein p19; Matrix, membrane-binding protein, Gag, HTLV-1...", "score": 222, "evalue": 9.5e-58 }}, {"summary_entry": { "description": "1JVR_A HUMAN T-CELL LEUKEMIA VIRUS TYPE II MATRIX PROTEIN; HUMAN T-CELL ...", "score": 214, "evalue": 3e-52 }}, {"summary_entry": { "description": "sp|P0C210|PRO_HTL1L Gag-Pro polyprotein OS=Human T-cell leukemia virus 1...", "score": 168, "evalue": 8.9e-33 }}, {"summary_entry": { "description": "sp|P03346|GAG_HTLV2 Gag polyprotein OS=Human T-cell leukemia virus 2 OX=...", "score": 168, "evalue": 5.5e-32 }}, {"summary_entry": { "description": "sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia vir...", "score": 171, "evalue": 1.3e-31 }}, {"summary_entry": { "description": "sp|P03345|GAG_HTL1A Gag polyprotein OS=Human T-cell leukemia virus 1 (st...", "score": 160, "evalue": 3.6e-30 }}, {"summary_entry": { "description": "sp|P03353|PRO_HTLV2 Gag-Pro polyprotein OS=Human T-cell leukemia virus 2...", "score": 165, "evalue": 1.2e-29 }}, {"summary_entry": { "description": "sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia vir...", "score": 166, "evalue": 1.4e-28 }}, {"summary_entry": { "description": "sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leukemia vir...", "score": 161, "evalue": 1.9e-27 }}, {"summary_entry": { "description": "sp|Q09T00|GAG_HTL3P Gag polyprotein OS=Human T-cell leukemia virus 3 (st...", "score": 132, "evalue": 8.8e-26 }}, {"summary_entry": { "description": "sp|P0DOI0|PRO_BLVJ Gag-Pro polyprotein OS=Bovine leukemia virus (isolate...", "score": 133, "evalue": 1.3e-24 }}, {"summary_entry": { "description": "sp|P25058|GAG_BLVAU Gag polyprotein OS=Bovine leukemia virus (isolate Au...", "score": 132, "evalue": 6.3e-24 }}, {"summary_entry": { "description": "sp|P03361|POL_BLVJ Gag-Pro-Pol polyprotein OS=Bovine leukemia virus (iso...", "score": 137, "evalue": 8.8e-24 }}, {"summary_entry": { "description": "sp|P03344|GAG_BLVJ Gag polyprotein OS=Bovine leukemia virus (isolate Jap...", "score": 124, "evalue": 9e-22 }}, {"summary_entry": { "description": "sp|Q09SZ9|PRO_HTL3P Gag-Pro polyprotein OS=Human T-cell leukemia virus 3...", "score": 108, "evalue": 6.5e-20 }} ], "search_hits": [ {"hit_record": { "target_description": "7M1W_A Matrix protein p19; Matrix, membrane-binding protein, Gag, HTLV-1, Human T-cell leukemia virus 1, VIRAL PROTEIN; NMR {Human T-cell leukemia virus type I}", "query_length": 105, "query_eno": 2.0, "target_length": 105, "target_eno": 2.0, "alignment": { "score": 221.62, "bit_score": 223.2, "evalue": 9.5e-58, "pvalue": 9.5e-58, "n_identities": 104, "n_positives": 0, "n_gaps": 0, "aln_length": 104, "query_from": 1, "query_to": 104, "target_from": 1, "target_to": 104, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhh eee hhhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAHHHHH", "target_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAHHHHH", "middle": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAHHHHH", "computed_K_ungapped": "0.1543", "computed_lambda_ungapped": "0.7937", "estimated_K_gapped": "0.0020", "estimated_lambda_gapped": "0.3990", "entropy": 0.2702, "expected_score": -0.2803, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "1JVR_A HUMAN T-CELL LEUKEMIA VIRUS TYPE II MATRIX PROTEIN; HUMAN T-CELL LEUKEMIA VIRUS TYPE II MATRIX PROTEIN, HTLV-II MATRIX PROTEIN, HTLV-II MA, RETROVIRAL MATRIX PROTEIN; NMR {Human T-lymphotropic virus 2} SCOP: a.61.1.2", "query_length": 105, "query_eno": 2.0, "target_length": 137, "target_eno": 2.0, "alignment": { "score": 214.29, "bit_score": 205.0, "evalue": 3e-52, "pvalue": 3e-52, "n_identities": 63, "n_positives": 36, "n_gaps": 0, "aln_length": 100, "query_from": 1, "query_to": 100, "target_from": 2, "target_to": 101, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhhh ee hhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAH", "target_aln": "MGQIHGLSPTPIPKAPRGLSTHHWLNFLQAAYRLQPGPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQVSPSAPAAP", "middle": "MG+I+++S++PIP++PRGL++HHWLNFLQAAYRL+PGPS++DF+QL++FLK+AL+TP+W++PI+YSLLASL+PKGYPGRV+EI++IL+++Q+++++ +A+", "computed_K_ungapped": "0.1571", "computed_lambda_ungapped": "0.8021", "estimated_K_gapped": "0.0020", "estimated_lambda_gapped": "0.4032", "entropy": 0.2714, "expected_score": -0.2801, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P0C210|PRO_HTL1L Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (isolate Melanesia mel5 subtype C) OX=402046 GN=gag-pro PE=1 SV=2", "query_length": 105, "query_eno": 2.0, "target_length": 651, "target_eno": 6.0, "alignment": { "score": 168.09, "bit_score": 140.3, "evalue": 8.9e-33, "pvalue": 8.9e-33, "n_identities": 84, "n_positives": 12, "n_gaps": 0, "aln_length": 97, "query_from": 1, "query_to": 97, "target_from": 1, "target_to": 97, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh ee hhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSR", "target_aln": "MGQIFPRSANPIPRPPRGLATHHWLNFLQAAYRLEPGPSSYDFHQLKTVLKMALETPVWMCPINYSLLASLLPKGYPGQVNEILQVLIQTQTQIPSH", "middle": "MG+IF+RSA+PIPRPPRGLA+HHWLNFLQAAYRLEPGPSSYDFHQLK++LK+ALETPVW+CPINYSLLASLLPKGYPG+VNEIL++LIQTQ+QIPS ", "computed_K_ungapped": "0.0943", "computed_lambda_ungapped": "0.9734", "estimated_K_gapped": "0.0012", "estimated_lambda_gapped": "0.4893", "entropy": 0.1592, "expected_score": -0.1461, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P03346|GAG_HTLV2 Gag polyprotein OS=Human T-cell leukemia virus 2 OX=11909 GN=gag PE=1 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 433, "target_eno": 8.0, "alignment": { "score": 168.25, "bit_score": 137.7, "evalue": 5.5e-32, "pvalue": 5.5e-32, "n_identities": 61, "n_positives": 32, "n_gaps": 0, "aln_length": 93, "query_from": 1, "query_to": 93, "target_from": 1, "target_to": 93, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh eee hhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQ", "target_aln": "MGQIHGLSPTPIPKAPRGLSTHHWLNFLQAAYRLQPRPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQVS", "middle": "MG+I+++S++PIP++PRGL++HHWLNFLQAAYRL+P+PS++DF+QL++FLK+AL+TP+W++PI+YSLLASL+PKGYPGRV+EI++IL+++Q++", "computed_K_ungapped": "0.0846", "computed_lambda_ungapped": "0.8599", "estimated_K_gapped": "0.0011", "estimated_lambda_gapped": "0.4323", "entropy": 0.1259, "expected_score": -0.1292, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain 2026ND) OX=402036 GN=gag-pro-pol PE=3 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 1440, "target_eno": 3.0, "alignment": { "score": 171.10, "bit_score": 136.4, "evalue": 1.3e-31, "pvalue": 1.3e-31, "n_identities": 63, "n_positives": 34, "n_gaps": 0, "aln_length": 98, "query_from": 1, "query_to": 98, "target_from": 1, "target_to": 98, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh ee hhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRP", "target_aln": "MGKTYSSPINPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRVHEIVAILIQETPAREAPP", "middle": "MG+++S++++PIP++P+GLA+HHWLNFLQAAYRL+PGPS++DFHQL+KFLK+A++TPVW++PINYS+LA+L+PK+YPGRV+EI++ILIQ+++++++ P", "computed_K_ungapped": "0.1072", "computed_lambda_ungapped": "1.0548", "estimated_K_gapped": "0.0014", "estimated_lambda_gapped": "0.5302", "entropy": 0.2057, "expected_score": -0.1711, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P03345|GAG_HTL1A Gag polyprotein OS=Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A) OX=11926 GN=gag PE=1 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 429, "target_eno": 8.0, "alignment": { "score": 160.40, "bit_score": 131.6, "evalue": 3.6e-30, "pvalue": 3.6e-30, "n_identities": 96, "n_positives": 4, "n_gaps": 0, "aln_length": 100, "query_from": 1, "query_to": 100, "target_from": 1, "target_to": 100, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh ee hhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAH", "target_aln": "MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAP", "middle": "MG+IFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETP++ICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPA+", "computed_K_ungapped": "0.0851", "computed_lambda_ungapped": "0.8925", "estimated_K_gapped": "0.0011", "estimated_lambda_gapped": "0.4487", "entropy": 0.1275, "expected_score": -0.1271, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P03353|PRO_HTLV2 Gag-Pro polyprotein OS=Human T-cell leukemia virus 2 OX=11909 GN=gag-pro PE=1 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 602, "target_eno": 7.0, "alignment": { "score": 164.84, "bit_score": 129.9, "evalue": 1.2e-29, "pvalue": 1.2e-29, "n_identities": 61, "n_positives": 34, "n_gaps": 0, "aln_length": 95, "query_from": 1, "query_to": 95, "target_from": 1, "target_to": 95, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh eee hhhhhhhhhh ", "query_aln": 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"target_to": 99, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhh ee hhhhhhh hhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAH", "target_aln": "MGQIHGLSPTPIPKAPRGLSTHHWLNFLQAAYRLQPRPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQVSP-SAPAA", "middle": "MG+I+++S++PIP++PRGL++HHWLNFLQAAYRL+P+PS++DF+QL++FLK+AL+TP+W++PI+YSLLASL+PKGYPGRV+EI++IL+++Q+++ S+PA+", "computed_K_ungapped": "0.1071", "computed_lambda_ungapped": "1.0208", "estimated_K_gapped": "0.0014", "estimated_lambda_gapped": "0.5131", "entropy": 0.2040, "expected_score": -0.1733, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A) OX=11926 GN=gag-pro-pol PE=1 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 1462, "target_eno": 3.0, "alignment": { "score": 160.86, "bit_score": 122.6, "evalue": 1.9e-27, "pvalue": 1.9e-27, "n_identities": 96, "n_positives": 4, "n_gaps": 0, "aln_length": 100, "query_from": 1, "query_to": 100, "target_from": 1, "target_to": 100, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh hhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAH", "target_aln": "MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPAP", "middle": "MG+IFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETP++ICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSRPA+", "computed_K_ungapped": "0.1045", "computed_lambda_ungapped": "1.0275", "estimated_K_gapped": "0.0013", "estimated_lambda_gapped": "0.5165", "entropy": 0.1934, "expected_score": -0.1659, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q09T00|GAG_HTL3P Gag polyprotein OS=Human T-cell leukemia virus 3 (strain Pyl43) OX=406769 GN=gag PE=3 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 422, "target_eno": 7.0, "alignment": { "score": 131.57, "bit_score": 117.0, "evalue": 8.8e-26, "pvalue": 8.8e-26, "n_identities": 62, "n_positives": 34, "n_gaps": 0, "aln_length": 97, "query_from": 1, "query_to": 97, "target_from": 1, "target_to": 97, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhhhh eeeee hhhhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIPSR", "target_aln": "MGKTYSSPVNPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLARLIPKNYPGRVHEIVAILIQETPAREAP", "middle": "MG+++S++++PIP++P+GLA+HHWLNFLQAAYRL+PGPS++DFHQL+KFLK+A++TPVW++PINYS+LA+L+PK+YPGRV+EI++ILIQ++++ +++", "computed_K_ungapped": "0.0881", "computed_lambda_ungapped": "0.9623", "estimated_K_gapped": "0.0011", "estimated_lambda_gapped": "0.4837", "entropy": 0.1552, "expected_score": -0.1442, "min_score": -2, "max_score": 3 } }}, {"hit_record": { "target_description": "sp|P0DOI0|PRO_BLVJ Gag-Pro polyprotein OS=Bovine leukemia virus (isolate Japanese BLV-1) OX=11907 PE=3 SV=1", "query_length": 105, "query_eno": 2.0, "target_length": 571, "target_eno": 7.0, "alignment": { "score": 132.69, "bit_score": 113.1, "evalue": 1.3e-24, "pvalue": 1.3e-24, "n_identities": 29, "n_positives": 60, "n_gaps": 3, "aln_length": 92, "query_from": 7, "query_to": 97, "target_from": 1, "target_to": 90, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh hhhhhhhhhhh ", "query_aln": "RSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLAS-LLPKGYPGRVNEILHILIQTQAQIPSR", "target_aln": "MGNSPSYNPPAGISPSDWLNLLQSAQRLNPRPSPSDFTDLKNYIHWFHKTQK--KPWTFTSGGPTSCPPGRFGRVPLVLATLNEVLSNEGGA", "middle": "+++SP+++PP+G+++++WLN+LQ+A+RL+P+PS++DF++LK++++++++T++ +P++++++++ ++P+G++GRV+++L++L++++++++++", "computed_K_ungapped": "0.0940", "computed_lambda_ungapped": "0.9913", "estimated_K_gapped": "0.0012", "estimated_lambda_gapped": "0.4983", "entropy": 0.1614, "expected_score": -0.1459, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P25058|GAG_BLVAU Gag polyprotein OS=Bovine leukemia virus (isolate Australian) OX=11903 GN=gag PE=1 SV=4", "query_length": 105, "query_eno": 2.0, "target_length": 392, "target_eno": 8.0, "alignment": { "score": 132.21, "bit_score": 110.9, "evalue": 6.3e-24, "pvalue": 6.3e-24, "n_identities": 28, "n_positives": 58, "n_gaps": 7, "aln_length": 93, "query_from": 7, "query_to": 96, "target_from": 1, "target_to": 89, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhh eeeeee ", "query_aln": "RSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLL---PKGYPGRVNEILHILIQTQAQIPS", "target_aln": "MGNSPSYNPPAGISPSDWLNLLQSAQRLNPRPSPSDFTDLKNYIHWFHKTQK----KPWTFTSGGPASCPPGKFGRVPLVLATLNEVLSNDEG", "middle": "+++SP+++PP+G+++++WLN+LQ+A+RL+P+PS++DF++LK++++++++T++ ++++++++++ P+G++GRV+++L++L+++++++++", "computed_K_ungapped": "0.0850", "computed_lambda_ungapped": "0.8990", "estimated_K_gapped": "0.0011", "estimated_lambda_gapped": "0.4519", "entropy": 0.1284, "expected_score": -0.1271, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P03361|POL_BLVJ Gag-Pro-Pol polyprotein OS=Bovine leukemia virus (isolate Japanese BLV-1) OX=11907 GN=pol PE=3 SV=2", "query_length": 105, "query_eno": 2.0, "target_length": 1416, "target_eno": 4.0, "alignment": { "score": 137.35, "bit_score": 110.4, "evalue": 8.8e-24, "pvalue": 8.8e-24, "n_identities": 30, "n_positives": 59, "n_gaps": 3, "aln_length": 93, "query_from": 7, "query_to": 98, "target_from": 1, "target_to": 91, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhh ", "query_aln": "RSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLL-PKGYPGRVNEILHILIQTQAQIPSRP", "target_aln": "MGNSPSYNPPAGISPSDWLNLLQSAQRLNPRPSPSDFTDLKNYIHWFHKTQK--KPWTFTSGGPTSCPPGRFGRVPLVLATLNEVLSNEGGAP", "middle": "+++SP+++PP+G+++++WLN+LQ+A+RL+P+PS++DF++LK++++++++T++ +P++++++++++ P+G++GRV+++L++L+++++++++ P", "computed_K_ungapped": "0.1020", "computed_lambda_ungapped": "1.0569", "estimated_K_gapped": "0.0013", "estimated_lambda_gapped": "0.5313", "entropy": 0.1979, "expected_score": -0.1650, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P03344|GAG_BLVJ Gag polyprotein OS=Bovine leukemia virus (isolate Japanese BLV-1) OX=11907 GN=gag PE=1 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 392, "target_eno": 9.0, "alignment": { "score": 124.24, "bit_score": 103.7, "evalue": 9e-22, "pvalue": 9e-22, "n_identities": 29, "n_positives": 58, "n_gaps": 3, "aln_length": 90, "query_from": 7, "query_to": 95, "target_from": 1, "target_to": 88, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhh hhhhhhhhhhhh ", "query_aln": "RSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLL-PKGYPGRVNEILHILIQTQAQIP", "target_aln": "MGNSPSYNPPAGISPSDWLNLLQSAQRLNPRPSPSDFTDLKNYIHWFHKTQK--KPWTFTSGGPTSCPPGRFGRVPLVLATLNEVLSNEG", "middle": "+++SP+++PP+G+++++WLN+LQ+A+RL+P+PS++DF++LK++++++++T++ +P++++++++++ P+G++GRV+++L++L++++++++", "computed_K_ungapped": "0.0896", "computed_lambda_ungapped": "0.9322", "estimated_K_gapped": "0.0012", "estimated_lambda_gapped": "0.4686", "entropy": 0.1331, "expected_score": -0.1296, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q09SZ9|PRO_HTL3P Gag-Pro polyprotein OS=Human T-cell leukemia virus 3 (strain Pyl43) OX=406769 GN=gag-pro PE=3 SV=3", "query_length": 105, "query_eno": 2.0, "target_length": 584, "target_eno": 7.0, "alignment": { "score": 108.46, "bit_score": 97.5, "evalue": 6.5e-20, "pvalue": 6.5e-20, "n_identities": 62, "n_positives": 29, "n_gaps": 0, "aln_length": 95, "query_from": 1, "query_to": 95, "target_from": 1, "target_to": 95, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhhhhhhhhh hhhhhhhhhh eeeee hhhhhhhhhhhhh ", "query_aln": "MGRIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRVNEILHILIQTQAQIP", "target_aln": "MGKTYSSPVNPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLARLIPKNYPGRVHEIVAILIQETPARE", "middle": "MG+++S++++PIP++P+GLA+HHWLNFLQAAYRL+PGPS++DFHQL+KFLK+A++TPVW +PINYS+LA+L PK+YPGRV+EI +ILIQ++++ +", "computed_K_ungapped": "0.1110", "computed_lambda_ungapped": "1.0670", "estimated_K_gapped": "0.0014", "estimated_lambda_gapped": "0.5364", "entropy": 0.2071, "expected_score": -0.1728, "min_score": -2, "max_score": 4 } }} ], "search_statistics": { "reference_K_ungapped": 0.1158, "reference_lambda_ungapped": 1.1163, "reference_K_gapped": 0.0015, "reference_lambda_gapped": 0.5611, "query_length": 105, "database_size": 143238575, "effective_query_length": 105, "effective_database_size": 143238575, "effective_search_space": 15040050176 } }}