{"comer_search": { "program": "comer", "version": "2.03.03", "references": [ "Margelevicius, M. (2020). COMER2: GPU-accelerated sensitive and specific homology searches. Bioinformatics 36, 3570-3572.", "Margelevicius, M. (2016). Bayesian nonparametrics in protein remote homology search. Bioinformatics 32, 2744-2752." ], "query": { "length": 262, "name": "", "description": "P0C6J7, Duck hepatitis B virus (MSA in A3M format)" }, "database": { "names": [ "swissprot90_2022_03", "pdb70_220717" ], "number_of_profiles": 390907, "number_of_positions": 143238575 }, "message": "Profiles found below the e-value threshold:", "search_summary": [ {"summary_entry": { "description": "sp|P0C6J7|CAPSD_DHBV1 Capsid protein OS=Duck hepatitis B virus (strain U...", "score": 424, "evalue": 6.6e-79 }}, {"summary_entry": { "description": "6YGH_D Capsid protein; duck hepatitis B core protein, extension domain, ...", "score": 397, "evalue": 2.9e-73 }}, {"summary_entry": { "description": "sp|P03154|HBEAG_DHBV1 External core antigen OS=Duck hepatitis B virus (s...", "score": 403, "evalue": 8.6e-72 }}, {"summary_entry": { "description": "sp|P0C6K0|CAPSD_HHBV Capsid protein OS=Heron hepatitis B virus OX=28300 ...", "score": 341, "evalue": 4.5e-62 }}, {"summary_entry": { "description": "sp|P13845|HBEAG_HHBV External core antigen OS=Heron hepatitis B virus OX...", "score": 341, "evalue": 9.6e-60 }}, {"summary_entry": { "description": "6YGI_C Capsid protein,Capsid protein; duck hepatitis B core protein, ext...", "score": 274, "evalue": 9e-51 }}, {"summary_entry": { "description": "sp|O91532|HBEAG_HBVA7 External core antigen OS=Hepatitis B virus genotyp...", "score": 153, "evalue": 9.1e-29 }}, {"summary_entry": { "description": "sp|P0C6J0|HBEAG_WMHBV External core antigen OS=Woolly monkey hepatitis B...", "score": 145, "evalue": 7.4e-27 }}, {"summary_entry": { "description": "sp|P0C6J2|HBEAG_WHV1 External core antigen OS=Woodchuck hepatitis B viru...", "score": 141, "evalue": 9.7e-26 }}, {"summary_entry": { "description": "7PZL_A Capsid protein; HBc-L60V (low secretion phenotype) in complex wit...", "score": 134, "evalue": 1.3e-25 }}, {"summary_entry": { "description": "sp|O71303|CAPSD_WMHBV Capsid protein OS=Woolly monkey hepatitis B virus ...", "score": 133, "evalue": 2.3e-25 }}, {"summary_entry": { "description": "sp|P0C682|CAPSD_HBVG3 Capsid protein OS=Hepatitis B virus genotype G (is...", "score": 135, "evalue": 3.2e-25 }}, {"summary_entry": { "description": "sp|P69709|CAPSD_WHV1 Capsid protein OS=Woodchuck hepatitis B virus (isol...", "score": 130, "evalue": 2.2e-24 }}, {"summary_entry": { "description": "sp|Q67863|XCORE_HBVC4 Putative X-Core fused protein OS=Hepatitis B virus...", "score": 139, "evalue": 3e-22 }}, {"summary_entry": { "description": "6ECS_C External core antigen; WHV, Core protein dimer, VIRAL PROTEIN; 2....", "score": 115, "evalue": 6e-22 }}, {"summary_entry": { "description": "6T36_B Capsid protein; PDZ domain, HBV core, HBV capsid, hepatitis B vir...", "score": 120, "evalue": 3.2e-21 }}, {"summary_entry": { "description": "5T2P_D Core protein; HEPATITIS B VIRUS, HBV, CORE PROTEIN, CAPSID, Y132A...", "score": 110, "evalue": 1.4e-20 }}, {"summary_entry": { "description": "7FDJ_C Capsid protein,Immunoglobulin G-binding protein A; cancer therapy...", "score": 80, "evalue": 2.6e-10 }}, {"summary_entry": { "description": "sp|Q7RX84|CWC22_NEUCR Pre-mRNA-splicing factor cwc22 OS=Neurospora crass...", "score": 42, "evalue": 2 }}, {"summary_entry": { "description": "7DVQ_8 Serine\/arginine repetitive matrix protein 1; spliceosome, minor ...", "score": 37, "evalue": 2.6 }}, {"summary_entry": { "description": "sp|Q12GW5|RS3_POLSJ 30S ribosomal protein S3 OS=Polaromonas sp. (strain ...", "score": 33, "evalue": 3.3 }}, {"summary_entry": { "description": "sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens OX=9606 GN=SON PE=1 SV=4", "score": 38, "evalue": 3.9 }}, {"summary_entry": { "description": "sp|Q0I7K2|IF2_SYNS3 Translation initiation factor IF-2 OS=Synechococcus ...", "score": 38, "evalue": 4 }}, {"summary_entry": { "description": "sp|Q9QX47|SON_MOUSE Protein SON OS=Mus musculus OX=10090 GN=Son PE=1 SV=2", "score": 37, "evalue": 4.8 }}, {"summary_entry": { "description": "sp|Q6GZU4|032R_FRG3G Uncharacterized protein 032R OS=Frog virus 3 (isola...", "score": 38, "evalue": 6.2 }}, {"summary_entry": { "description": "sp|Q8NEE8|TTC16_HUMAN Tetratricopeptide repeat protein 16 OS=Homo sapien...", "score": 36, "evalue": 6.6 }}, {"summary_entry": { "description": "sp|P0CM96|CWC22_CRYNJ Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neo...", "score": 35, "evalue": 8.3 }}, {"summary_entry": { "description": "sp|Q9UQ35|SRRM2_HUMAN Serine\/arginine repetitive matrix protein 2 OS=Ho...", "score": 38, "evalue": 8.5 }}, {"summary_entry": { "description": "sp|Q8BTI8|SRRM2_MOUSE Serine\/arginine repetitive matrix protein 2 OS=Mu...", "score": 38, "evalue": 9.9 }} ], "search_hits": [ {"hit_record": { "target_description": "sp|P0C6J7|CAPSD_DHBV1 Capsid protein OS=Duck hepatitis B virus (strain United States\/DHBV-16) OX=489543 GN=C PE=1 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 262, "target_eno": 2.0, "alignment": { "score": 424.43, "bit_score": 294.8, "evalue": 6.6e-79, "pvalue": 6.6e-79, "n_identities": 262, "n_positives": 0, "n_gaps": 0, "aln_length": 262, "query_from": 1, "query_to": 262, "target_from": 1, "target_to": 262, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhhhhh hhhhhhhhhhh eeeeeee hhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhh hhhhhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh eee eeee eeeee ", "query_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "target_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "middle": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "computed_K_ungapped": "0.1438", "computed_lambda_ungapped": "0.8997", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.4523", "entropy": 0.2601, "expected_score": -0.2392, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "6YGH_D Capsid protein; duck hepatitis B core protein, extension domain, spike, slowly folding, VIRUS LIKE PARTICLE;{Hepatitis B virus duck\/DHBV-16}", "query_length": 262, "query_eno": 2.0, "target_length": 262, "target_eno": 2.0, "alignment": { "score": 396.58, "bit_score": 276.1, "evalue": 2.9e-73, "pvalue": 2.9e-73, "n_identities": 262, "n_positives": 0, "n_gaps": 0, "aln_length": 262, "query_from": 1, "query_to": 262, "target_from": 1, "target_to": 262, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhhhhh hhhhhhhhhhh eeeeeee hhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh ee eee eeeeee ", "query_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "target_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "middle": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "computed_K_ungapped": "0.1407", "computed_lambda_ungapped": "0.8932", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.4490", "entropy": 0.2489, "expected_score": -0.2318, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P03154|HBEAG_DHBV1 External core antigen OS=Duck hepatitis B virus (strain United States\/DHBV-16) OX=489543 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 305, "target_eno": 2.0, "alignment": { "score": 402.66, "bit_score": 271.2, "evalue": 8.6e-72, "pvalue": 8.6e-72, "n_identities": 262, "n_positives": 0, "n_gaps": 0, "aln_length": 262, "query_from": 1, "query_to": 262, "target_from": 44, "target_to": 305, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhhhh hhhhhhhhhhh eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhh hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh eeee eeeee ", "query_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "target_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "middle": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "computed_K_ungapped": "0.1364", "computed_lambda_ungapped": "0.9130", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.4589", "entropy": 0.2753, "expected_score": -0.2431, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P0C6K0|CAPSD_HHBV Capsid protein OS=Heron hepatitis B virus OX=28300 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 262, "target_eno": 2.0, "alignment": { "score": 341.30, "bit_score": 238.9, "evalue": 4.5e-62, "pvalue": 4.5e-62, "n_identities": 219, "n_positives": 41, "n_gaps": 0, "aln_length": 262, "query_from": 1, "query_to": 262, "target_from": 1, "target_to": 262, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhhhhhh hhhhhhhhhhh hhhhhh eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhhh hhhhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh eee ", "query_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "target_aln": "MDVNASRALANVYDLPDDFFPQIDDLVRDAKDALEPYWKAETIKKHVLIATHFVDLIEDFWQTTQGMSQIADALRAVIPPTTVPVPEGFLITHSEAEEIPLNDLFSNQEERIVNFQPDYPITARIHTHLRVYTKLNEQALDKARRLLWWHYNCLLWGEATVTNYISRLRTWLSTPEKYRGKDAPTIEAITRPIQVAQGGRNQTKGTRKPRGLEPRRRKVKTTVVYGRRRSKSRGRRSSPSQRAGSPLPRNRGNQTRSPSPRE", "middle": "MD+NASRALANVYDLPDDFFP+IDDLVRDAKDALEPYWK+++IKKHVLIATHFVDLIEDFWQTTQGM++IA++LRAVIPPTT+PVP+G+LI+H+EAEEIPL+DLF++QEERIV+FQPDYPITARIH HL++Y+K+NE++LD+ARRLLWWHYNCLLWGEA+VTNYISRLRTWLSTPEKYRG+DAPTIEAITRPIQVAQGGR++T+GTRKPRGLEPRRRKVKTTVVYGRRRSKSR+RR+ ++QRAGSPLPR++++++RSPSPR+", "computed_K_ungapped": "0.1391", "computed_lambda_ungapped": "0.9232", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.4641", "entropy": 0.2431, "expected_score": -0.2203, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P13845|HBEAG_HHBV External core antigen OS=Heron hepatitis B virus OX=28300 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 305, "target_eno": 2.0, "alignment": { "score": 341.00, "bit_score": 231.2, "evalue": 9.6e-60, "pvalue": 9.6e-60, "n_identities": 219, "n_positives": 42, "n_gaps": 0, "aln_length": 262, "query_from": 1, "query_to": 262, "target_from": 44, "target_to": 305, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhhhhh hhhhhhhhhhh hhhhhh eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh hhhhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh eee ", "query_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "target_aln": "MDVNASRALANVYDLPDDFFPQIDDLVRDAKDALEPYWKAETIKKHVLIATHFVDLIEDFWQTTQGMSQIADALRAVIPPTTVPVPEGFLITHSEAEEIPLNDLFSNQEERIVNFQPDYPITARIHTHLRVYTKLNEQALDKARRLLWWHYNCLLWGEATVTNYISRLRTWLSTPEKYRGKDAPTIEAITRPIQVAQGGRNQTKGTRKPRGLEPRRRKVKTTVVYGRRRSKSRGRRSSPSQRAGSPLPRNRGNQTRSPSPRE", "middle": "MD+NASRALANVYDLPDDFFP+IDDLVRDAKDALEPYWK+++IKKHVLIATHFVDLIEDFWQTTQGM++IA++LRAVIPPTT+PVP+G+LI+H+EAEEIPL+DLF++QEERIV+FQPDYPITARIH HL++Y+K+NE++LD+ARRLLWWHYNCLLWGEA+VTNYISRLRTWLSTPEKYRG+DAPTIEAITRPIQVAQGGR++T+GTRKPRGLEPRRRKVKTTVVYGRRRSKSR+RR++++QRAGSPLPR++++++RSPSPR+", "computed_K_ungapped": "0.1329", "computed_lambda_ungapped": "0.9405", "estimated_K_gapped": "0.0017", "estimated_lambda_gapped": "0.4728", "entropy": 0.2519, "expected_score": -0.2206, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "6YGI_C Capsid protein,Capsid protein; duck hepatitis B core protein, extension domain, spike, slowly folding, VIRUS LIKE PARTICLE;{Hepatitis B virus duck\/DHBV-16} SCOP: a.62.1.0", "query_length": 262, "query_eno": 2.0, "target_length": 222, "target_eno": 3.0, "alignment": { "score": 273.54, "bit_score": 201.4, "evalue": 9e-51, "pvalue": 9e-51, "n_identities": 216, "n_positives": 6, "n_gaps": 40, "aln_length": 262, "query_from": 1, "query_to": 262, "target_from": 1, "target_to": 222, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhhhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhh hhhhh hhhhhhhhhhhhhhhhhhhhhh h hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh ee eeee eeeeee ", "query_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "target_aln": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVGGS-------------------------------------GG---AEIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "middle": "MDINASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAV+++ ++ A+IHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPSPRK", "computed_K_ungapped": "0.1254", "computed_lambda_ungapped": "0.9205", "estimated_K_gapped": "0.0016", "estimated_lambda_gapped": "0.4627", "entropy": 0.2573, "expected_score": -0.2322, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|O91532|HBEAG_HBVA7 External core antigen OS=Hepatitis B virus genotype A2 (isolate Japan\/11D11HCCW\/1998) OX=489457 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 214, "target_eno": 3.0, "alignment": { "score": 153.05, "bit_score": 128.3, "evalue": 9.1e-29, "pvalue": 9.1e-29, "n_identities": 51, "n_positives": 101, "n_gaps": 89, "aln_length": 259, "query_from": 6, "query_to": 259, "target_from": 39, "target_to": 213, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhhh hhhhhhhhhhh ee eeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhh hhhhhhhhhhhhhhhh hhhhhhhhhhhhhhhh hh hhh hhh hhhh hhhhhh hhhhhhhhhhhhhhhhhh hhhhhhhhhhh ", "query_aln": "SRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSD--SIKKHV---LIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "GATVELLSFLPSDFFPSVRDLLDTASALYREALESPEHCSPHHTALRQAILCWVELM-TL----------ATW---VGNNL---------------QDPASRD--------------------------LVVNYVNTNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLP-----------------------------ETTVVRRRDRGRSPRRRTPSPRRRRSQSPRRRRSQSRESQ", "middle": " ++++++ LP+DFFP ++DL++ A+++ +++++S+ +++ H +++ V+L+ ++ A V+++ +++ D +++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP++++++ +TTVV++R+R++S++RR+P+P+R++S++PR+++S++R+++", "computed_K_ungapped": "0.1445", "computed_lambda_ungapped": "1.0046", "estimated_K_gapped": "0.0019", "estimated_lambda_gapped": "0.5050", "entropy": 0.3093, "expected_score": -0.2486, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P0C6J0|HBEAG_WMHBV External core antigen OS=Woolly monkey hepatitis B virus (isolate Louisville) OX=490134 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 211, "target_eno": 3.0, "alignment": { "score": 144.52, "bit_score": 121.9, "evalue": 7.4e-27, "pvalue": 7.4e-27, "n_identities": 51, "n_positives": 102, "n_gaps": 92, "aln_length": 259, "query_from": 6, "query_to": 259, "target_from": 39, "target_to": 210, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhhh hhhhhhhhhhh eeee ee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhh hhhhhhhhhhhhhhhhh hhhhhhhhhhhhhhh hh hhh hhhh h hhh hhhhh hhhhhhhhhhhhhhhhhh hhhhhhhhhhh hhh ", "query_aln": "SRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSD--SIKKHVLI---ATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "GATVELLSFLPADFFPSVRDLLDTASALYREALESSDHCSPHHTALRQTVLCWGELM-SL----------ASW---VGTNL---------------E------------------DPA-ARE-------LVVSYVNDNMGLKVRQLLWFHISCLTFGRETVLEYLVSFWVWIRTPPAYRPPNAPILSTLP-----------------------------ETTVV--RRR-RPSGRRTPSPRRRRSQSPRRRRSQSPASS", "middle": " ++++++ LP+DFFP ++DL++ A+++ +++++S+ +++ H+ + +++ ++L+ ++ A + V+++ E +P ++ +++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP++++++ +TTVV RRR ++++RR+P+P+R++S++PR+++S+++++S", "computed_K_ungapped": "0.1393", "computed_lambda_ungapped": "0.9996", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.5025", "entropy": 0.3072, "expected_score": -0.2476, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P0C6J2|HBEAG_WHV1 External core antigen OS=Woodchuck hepatitis B virus (isolate 1) OX=10430 GN=C PE=1 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 218, "target_eno": 3.0, "alignment": { "score": 140.95, "bit_score": 118.2, "evalue": 9.7e-26, "pvalue": 9.7e-26, "n_identities": 45, "n_positives": 108, "n_gaps": 86, "aln_length": 256, "query_from": 9, "query_to": 259, "target_from": 43, "target_to": 217, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": "hhhh hhhh hhhhhhhhh hhhhh hhhhhhhhhh hhhhh hh hh hhhhh hhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhh ", "query_aln": "LANVYDLPDDFFPKIDDLVRDAKDALEPYWK--SDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGR---RRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "YQLLNFLPLDFFPDLNALVDTATALYEEELTGREHCSPHHTAI-RQALVCWDEL---TKLIA--WM--SSN----------I--------TSEQVRT--------------------------IIVNHVNDTWGLKVRQSLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPNAPILSTLP-----------------------------EHTVIRRRGGARASRSPRRRTPSPRRRRSQSPRRRRSQSPSAN", "middle": " +++ LP+DFFP +++LV A+++ E++++ +++++ H+ I ++++++++++ T++++ + +++ + +++ + + ++N+++++++R++LW+H++CL++G+++V+++++++++W++TP++YR+++AP++++++ ++TV+ +R R+S+S++RR+P+P+R++S++PR+++S+++S++", "computed_K_ungapped": "0.1381", "computed_lambda_ungapped": "0.9957", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.5005", "entropy": 0.2884, "expected_score": -0.2355, "min_score": -2, "max_score": 3 } }}, {"hit_record": { "target_description": "7PZL_A Capsid protein; HBc-L60V (low secretion phenotype) in complex with Triton X-100, VIRAL PROTEIN; HET: TRT; 2.8A {Hepatitis B virus genotype D subtype ayw (isolate France\/Tiollais\/1979)}", "query_length": 262, "query_eno": 2.0, "target_length": 183, "target_eno": 3.0, "alignment": { "score": 134.31, "bit_score": 117.7, "evalue": 1.3e-25, "pvalue": 1.3e-25, "n_identities": 50, "n_positives": 95, "n_gaps": 91, "aln_length": 259, "query_from": 5, "query_to": 258, "target_from": 9, "target_to": 181, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhhhh hhhhhhhhhhh eee eee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhh hhhhhhhhhhhhhhh hhhhhhhhhhhhhhhh h hh hh hhh hhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh ee hhh ", "query_aln": "ASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDS--IKKHVL---IATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSP", "target_aln": "FGATVELLSFLPSDFFPSVRDLLDTASALYREALESPEHCSPHHTALRQAIVCWGELMTLA-----------T--------WV---------GVN-LEDPASRD--------------------------LVVSYVNTNMGLKFRQLLWFHISCLTFGRETVIEYLVSFGVWIRTPPAYRPPNAPILSTLP-----------------------------ETTVV--RRRGRSPRRRTPSPRRRRSQSPRRRRSQSRES", "middle": " ++++++ LP+DFFP+++DL+++A ++ +++++S + + H + + +L++ + + + ++ E++++ D +++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP++++++ +TTVV RRR++S++RR+P+P+R S++PR+++S++R++", "computed_K_ungapped": "0.1150", "computed_lambda_ungapped": "0.9775", "estimated_K_gapped": "0.0015", "estimated_lambda_gapped": "0.4914", "entropy": 0.2498, "expected_score": -0.2132, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|O71303|CAPSD_WMHBV Capsid protein OS=Woolly monkey hepatitis B virus (isolate Louisville) OX=490134 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 182, "target_eno": 3.0, "alignment": { "score": 133.30, "bit_score": 117.0, "evalue": 2.3e-25, "pvalue": 2.3e-25, "n_identities": 50, "n_positives": 95, "n_gaps": 94, "aln_length": 260, "query_from": 6, "query_to": 259, "target_from": 10, "target_to": 181, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhh h eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhh hhhhhhhhhhhh hh hhhhhhhhhhhhhhhhhh h hhhhhhhh hhhhhhhhhhhhhhhhhh hhhhhhhhhhhhhhh ", "query_aln": "SRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSI--KKHVLIATHFVDLIEDFWQTTQGMHEIAESLRA----VIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "GATVELLSFLPADFFPSVRDLLDTASALYREALESSDHCSPHHTAL---------------RQTVLCWGELMSLASWVGTNLED---------------------------------PA--------ARELVVSYVNDNMGLKVRQLLWFHISCLTFGRETVLEYLVSFWVWIRTPPAYRPPNAPILSTLP-----------------------------ETTVV--RRR-RPSGRRTPSPRRRRSQSPRRRRSQSPASS", "middle": " ++ +++ LP+DFFP++ DL+ A ++ +++++S++ ++H + +++ + ++ L+ V+++ ++ P A +++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP++++++ +TTVV RRR ++++RR+P+P+R++S++PR+++S+++++S", "computed_K_ungapped": "0.1227", "computed_lambda_ungapped": "0.9749", "estimated_K_gapped": "0.0016", "estimated_lambda_gapped": "0.4901", "entropy": 0.2513, "expected_score": -0.2140, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P0C682|CAPSD_HBVG3 Capsid protein OS=Hepatitis B virus genotype G (isolate IG29227\/2000) OX=489538 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 195, "target_eno": 3.0, "alignment": { "score": 134.99, "bit_score": 116.5, "evalue": 3.2e-25, "pvalue": 3.2e-25, "n_identities": 48, "n_positives": 99, "n_gaps": 89, "aln_length": 257, "query_from": 7, "query_to": 259, "target_from": 23, "target_to": 194, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhh h eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhh hh hhhhhhhh h hhhhhhhhhhhhhhhhhhhh hhhh hhhhhh hhhhhhhhhhhhhhhhhh hhhhhhhhhhh ee ", "query_aln": "RALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRA----VIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "ATVELLSFLPSDFFPSVRDLLDTASALYRESLESSDH--------CSPHHT-----ALRQAILCWGELMTLATWVGNNLED---------------PASRD--------------------------LVVNYVNTNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLP-----------------------------ETTVV--RRRGRSPRRRTPSPRRRRSQSPRRRRSASPASQ", "middle": "++ +++ LP+DFFP++ DL+ A ++ +++++S+ +++ ++++++ ++ L++ V+++ ++ + D +++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP++++++ +TTVV RRR++S++RR+P+P+R++S++PR+++S++++++", "computed_K_ungapped": "0.1216", "computed_lambda_ungapped": "0.9816", "estimated_K_gapped": "0.0016", "estimated_lambda_gapped": "0.4934", "entropy": 0.2596, "expected_score": -0.2164, "min_score": -2, "max_score": 3 } }}, {"hit_record": { "target_description": "sp|P69709|CAPSD_WHV1 Capsid protein OS=Woodchuck hepatitis B virus (isolate 1) OX=10430 GN=C PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 188, "target_eno": 3.0, "alignment": { "score": 130.37, "bit_score": 113.7, "evalue": 2.2e-24, "pvalue": 2.2e-24, "n_identities": 45, "n_positives": 106, "n_gaps": 86, "aln_length": 258, "query_from": 7, "query_to": 259, "target_from": 11, "target_to": 187, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhh hhhhhhhhh hh hhhhhhhhhhhh hh hhh hh hhhhh hhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhh ", "query_aln": "RALANVYDLPDDFFPKIDDLVRDAKDALEPYWKS--DSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGR---RRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "SSYQLLNFLPLDFFPDLNALVDTATALYEEELTGREHCSPHHTAI-RQALVCWDELTK----LI-AWM-----SSNIT---------------SEQVRT--------------------------IIVNHVNDTWGLKVRQSLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPNAPILSTLP-----------------------------EHTVIRRRGGARASRSPRRRTPSPRRRRSQSPRRRRSQSPSAN", "middle": "++ +++ LP DFFP + +LV A + E+++++ +++++H I ++++ +++++++ ++ ++ +++ T ++ + +++++N+++++++R++LW+H++CL++G+++V+++++++++W++TP++YR+++AP++++++ ++TV+ +R R+S+S++RR+P+P+R++S++PR+++S+++S++", "computed_K_ungapped": "0.1238", "computed_lambda_ungapped": "0.9694", "estimated_K_gapped": "0.0016", "estimated_lambda_gapped": "0.4873", "entropy": 0.2473, "expected_score": -0.2122, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q67863|XCORE_HBVC4 Putative X-Core fused protein OS=Hepatitis B virus genotype C subtype adr (isolate Korea\/Kim\/1989) OX=31512 PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 359, "target_eno": 2.0, "alignment": { "score": 138.72, "bit_score": 106.6, "evalue": 3e-22, "pvalue": 3e-22, "n_identities": 52, "n_positives": 103, "n_gaps": 91, "aln_length": 258, "query_from": 7, "query_to": 259, "target_from": 187, "target_to": 358, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhh hhhhhhhhhhh eee eee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": " hhhhhh hhhhhhhhhhhhhhhh hhhhhhhhhhhhhhhh hh hhh hhh hh hh hhhhh hhhhhhhhhhhhhhhhh hhhhhhhhhhh ee eee ", "query_aln": "RALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSD--SIKKHVL---IATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "ASVELLSFLPSDFFPSIRDLLDTASALYREALESPEHCSPHHTALRQAILCWGELM-NL----------ATW---VGSNL---------------------------------EDPAS-RE-------LVVSYVNVNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLP-----------------------------ETTVV--RRRGRSPRRRTPSPRRRRSESPRRRRSQSRESQ", "middle": "+++++++ LP+DFFP+I+DL++ A+++ +++++S+ +++ H ++++ ++L+ ++ A V+++ ++P + ++ +++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP++++++ +TTVV RRR++S++RR+P+P+R++S++PR+++S++R+++", "computed_K_ungapped": "0.1403", "computed_lambda_ungapped": "1.0457", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.5256", "entropy": 0.3195, "expected_score": -0.2459, "min_score": -2, "max_score": 3 } }}, {"hit_record": { "target_description": "6ECS_C External core antigen; WHV, Core protein dimer, VIRAL PROTEIN; 2.9A {Woodchuck hepatitis B virus} SCOP: a.62.1.0", "query_length": 262, "query_eno": 2.0, "target_length": 149, "target_eno": 4.0, "alignment": { "score": 114.75, "bit_score": 105.6, "evalue": 6e-22, "pvalue": 6e-22, "n_identities": 28, "n_positives": 90, "n_gaps": 62, "aln_length": 198, "query_from": 1, "query_to": 191, "target_from": 3, "target_to": 145, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " hhhh hhhhhh hhhhhhhhhhh ee eeee hhhhhhhhhhhhhhhhhhhhhhhh eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhh hhhhhhhhhhhhhhh hhhhhhhhhhhhhhhhhh hh hhh hhhhh hhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh ", "query_aln": "MDINAS--RALANVYDLPDDFFPKIDDLVRDAKDALEPYWKS--DSIKKHV---LIATHFVDLIEDFWQTTQGMHEIAESLRAVIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITR", "target_aln": "IDPYKEFGSSYQLLNFLPLDFFPDLNALVDTATALYEEELTGREHCSPHHTAIRQALVCWDELTKLI-----------AW---MSSN---------------ITSEQVRT--------------------------IIVNHVNDTWGLKVRQSLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPARPPNAPILSTLPE", "middle": "+D+ ++ +++ LP+DFFP++++LV++A+++ E+++++ + ++ H +++ +L++ + ++ ++++ +++++ + +++++N+++++++R++LW+H++CL++G+++V+++++++++W++TP+++R+++AP+++++++", "computed_K_ungapped": "0.1395", "computed_lambda_ungapped": "1.0394", "estimated_K_gapped": "0.0018", "estimated_lambda_gapped": "0.5225", "entropy": 0.3449, "expected_score": -0.2666, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "6T36_B Capsid protein; PDZ domain, HBV core, HBV capsid, hepatitis B virus, PTPN3, PDZ-binding motif, HYDROLASE; 1.86A {Homo sapiens}", "query_length": 262, "query_eno": 2.0, "target_length": 212, "target_eno": 2.0, "alignment": { "score": 120.16, "bit_score": 103.2, "evalue": 3.2e-21, "pvalue": 3.2e-21, "n_identities": 36, "n_positives": 60, "n_gaps": 31, "aln_length": 128, "query_from": 131, "query_to": 258, "target_from": 114, "target_to": 210, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh eeee eeeeee ", "target_secstr": "hhhh hhhhhhhhhhhhhhhhh hhhhhhhhhhh ", "query_aln": "AYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSP", "target_aln": "VVSYVNVNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPQNAPILSTLP-----------------------------ETTVV--RRRGRSPRRRTPSPRRRRSQSPRRRRSQSRES", "middle": "+++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP++++++ +TTVV RRR +S++RR+P+P+R++S++PR+++S++R++", "computed_K_ungapped": "0.1315", "computed_lambda_ungapped": "1.0287", "estimated_K_gapped": "0.0017", "estimated_lambda_gapped": "0.5171", "entropy": 0.2876, "expected_score": -0.2273, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "5T2P_D Core protein; HEPATITIS B VIRUS, HBV, CORE PROTEIN, CAPSID, Y132A DIMER, Y132A HEXAMER, sulfamoylbenzamide, SBA_R01, VIRAL PROTEIN; HET: K89, GOL, IPA; 1.693A {Hepatitis B virus} SCOP: a.62.1.1, l.1.1.1", "query_length": 262, "query_eno": 2.0, "target_length": 155, "target_eno": 3.0, "alignment": { "score": 109.99, "bit_score": 101.1, "evalue": 1.4e-20, "pvalue": 1.4e-20, "n_identities": 31, "n_positives": 82, "n_gaps": 58, "aln_length": 190, "query_from": 5, "query_to": 190, "target_from": 9, "target_to": 144, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhhhh hhhhhhhhhhh eeeeee hhhhhhhhhhhhhhhhhhhhhhh h eeee hhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": " hhhhh hhhhhhhhhhhhh hhhhhhhhhhhhhhhhhhhh hhh hhhhh hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh ", "query_aln": "ASRALANVYDLPDDFFPKIDDLVRDAKDALEPYWKSDSIKKHVLIATHFVDLIEDFWQTTQGMHEIAESLRA----VIPPTTTPVPPGYLIQHEEAEEIPLGDLFKHQEERIVSFQPDYPITARIHAHLKAYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAIT", "target_aln": "FGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEH--------CSPHHT-----ALRQAILCWGDLMTLATWVGTNL---------------EDPASRD--------------------------LVVSYVNTNVGLKFRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAARPPNAPILSTLP", "middle": " ++++++ LP+DFFP+++DL+++A ++ +++++S + +++ +++ + ++ L+ V++++ E++++ D +++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP+++R+++AP++++++", "computed_K_ungapped": "0.1347", "computed_lambda_ungapped": "1.0319", "estimated_K_gapped": "0.0017", "estimated_lambda_gapped": "0.5187", "entropy": 0.3118, "expected_score": -0.2458, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "7FDJ_C Capsid protein,Immunoglobulin G-binding protein A; cancer therapy, epidermal growth factor receptor 1, affibody, VIRUS LIKE PARTICLE;{Hepatitis B virus genotype C subtype adr (strain Japan\/adr4\/1983)}", "query_length": 262, "query_eno": 2.0, "target_length": 318, "target_eno": 2.0, "alignment": { "score": 80.38, "bit_score": 66.9, "evalue": 2.6e-10, "pvalue": 2.6e-10, "n_identities": 18, "n_positives": 43, "n_gaps": 0, "aln_length": 61, "query_from": 131, "query_to": 191, "target_from": 254, "target_to": 314, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhhhhhhhhhhhhhhhhhhhhhh hhhhhhhhhhhh ", "target_secstr": "hhhh hhhhhhhhhhhhhhhhhhh hhhhhhhhhh ", "query_aln": "AYAKINEESLDRARRLLWWHYNCLLWGEAQVTNYISRLRTWLSTPEKYRGRDAPTIEAITR", "target_aln": "VVSYVNVNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPE", "middle": "+++++N+++++++R+LLW+H++CL++G+++V++Y++++++W++TP++YR+++AP+++++++", "computed_K_ungapped": "0.1040", "computed_lambda_ungapped": "1.0289", "estimated_K_gapped": "0.0013", "estimated_lambda_gapped": "0.5172", "entropy": 0.2331, "expected_score": -0.1858, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q7RX84|CWC22_NEUCR Pre-mRNA-splicing factor cwc22 OS=Neurospora crassa (strain ATCC 24698 \/ 74-OR23-1A \/ CBS 708.71 \/ DSM 1257 \/ FGSC 987) OX=367110 GN=msp-1 PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 1010, "target_eno": 2.0, "alignment": { "score": 41.97, "bit_score": 34.1, "evalue": 2, "pvalue": 0.87, "n_identities": 1, "n_positives": 6, "n_gaps": 0, "aln_length": 10, "query_from": 42, "query_to": 51, "target_from": 423, "target_to": 432, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " eeeeee", "target_secstr": " eeeeeee ", "query_aln": "SIKKHVLIAT", "target_aln": "DQITHRIGLD", "middle": "++ +H++ + ", "computed_K_ungapped": "0.0716", "computed_lambda_ungapped": "0.7931", "estimated_K_gapped": "0.0009", "estimated_lambda_gapped": "0.3987", "entropy": 0.1186, "expected_score": -0.1304, "min_score": -2, "max_score": 3 } }}, {"hit_record": { "target_description": "7DVQ_8 Serine\/arginine repetitive matrix protein 1; spliceosome, minor spliceosome, Bact complex, human spliceosome, PPIL2, SCNM1, RBM48-ARMC7 complex, U12-type intron, U6atac snRNA, SPLICING; HET: GTP, G5J, TPO, SEP, IHP; 2.89A {Homo sapiens}", "query_length": 262, "query_eno": 2.0, "target_length": 904, "target_eno": 3.0, "alignment": { "score": 37.42, "bit_score": 33.8, "evalue": 2.6, "pvalue": 0.92, "n_identities": 3, "n_positives": 7, "n_gaps": 0, "aln_length": 14, "query_from": 41, "query_to": 54, "target_from": 80, "target_to": 93, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " eeeeee h", "target_secstr": " ", "query_aln": "DSIKKHVLIATHFV", "target_aln": "PDSKMMQINLTGFL", "middle": " ++K++ + +T F+", "computed_K_ungapped": "0.1251", "computed_lambda_ungapped": "0.9621", "estimated_K_gapped": "0.0016", "estimated_lambda_gapped": "0.4836", "entropy": 0.2175, "expected_score": -0.2018, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q12GW5|RS3_POLSJ 30S ribosomal protein S3 OS=Polaromonas sp. (strain JS666 \/ ATCC BAA-500) OX=296591 GN=rpsC PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 301, "target_eno": 7.0, "alignment": { "score": 33.06, "bit_score": 33.4, "evalue": 3.3, "pvalue": 0.96, "n_identities": 13, "n_positives": 47, "n_gaps": 9, "aln_length": 94, "query_from": 166, "query_to": 259, "target_from": 196, "target_to": 280, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhh eeee eeeeee ", "target_secstr": "eeeeeeee ", "query_aln": "SRLRTWLSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERRAPTPQRAGSPLPRSSSSHHRSPS", "target_aln": "IGVKVWVYKGDTLGRGESPGAKLDAAPSDEER-KPRGPRRDARPGSDRPAPR--------GARAPRAPAGGTNTAPADGSDKPAEATPGSDAPK", "middle": "+ +++W++ ++ + ++++P +++ ++P + + + +++++P++ +P +R G+R+ ++++ ++ T+ +GS P++ ++ +++P ", "computed_K_ungapped": "0.1207", "computed_lambda_ungapped": "1.1708", "estimated_K_gapped": "0.0016", "estimated_lambda_gapped": "0.5885", "entropy": 0.2813, "expected_score": -0.2064, "min_score": -2, "max_score": 3 } }}, {"hit_record": { "target_description": "sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens OX=9606 GN=SON PE=1 SV=4", "query_length": 262, "query_eno": 2.0, "target_length": 2426, "target_eno": 1.0, "alignment": { "score": 38.11, "bit_score": 33.2, "evalue": 3.9, "pvalue": 0.98, "n_identities": 6, "n_positives": 10, "n_gaps": 1, "aln_length": 24, "query_from": 77, "query_to": 99, "target_from": 1708, "target_to": 1731, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "h eeee ", "target_secstr": " ", "query_aln": "VIPPTTTPV-PPGYLIQHEEAEEI", "target_aln": "VPPPPKETLPDSGFSANIEDINEA", "middle": "V PP+ + ++G++ +E+ +E+", "computed_K_ungapped": "0.0746", "computed_lambda_ungapped": "0.8960", "estimated_K_gapped": "0.0010", "estimated_lambda_gapped": "0.4504", "entropy": 0.1850, "expected_score": -0.1647, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q0I7K2|IF2_SYNS3 Translation initiation factor IF-2 OS=Synechococcus sp. (strain CC9311) OX=64471 GN=infB PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 1129, "target_eno": 2.0, "alignment": { "score": 37.79, "bit_score": 33.1, "evalue": 4, "pvalue": 0.98, "n_identities": 6, "n_positives": 6, "n_gaps": 0, "aln_length": 21, "query_from": 175, "query_to": 195, "target_from": 181, "target_to": 201, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " eee", "target_secstr": " ", "query_aln": "PEKYRGRDAPTIEAITRPIQV", "target_aln": "PTSARPTPAPARPTGTSPVKR", "middle": "P++ R+ AP + T P++ ", "computed_K_ungapped": "0.0771", "computed_lambda_ungapped": "0.9068", "estimated_K_gapped": "0.0010", "estimated_lambda_gapped": "0.4559", "entropy": 0.1597, "expected_score": -0.1495, "min_score": -2, "max_score": 3 } }}, {"hit_record": { "target_description": "sp|Q9QX47|SON_MOUSE Protein SON OS=Mus musculus OX=10090 GN=Son PE=1 SV=2", "query_length": 262, "query_eno": 2.0, "target_length": 2444, "target_eno": 1.0, "alignment": { "score": 37.44, "bit_score": 32.9, "evalue": 4.8, "pvalue": 0.99, "n_identities": 4, "n_positives": 7, "n_gaps": 0, "aln_length": 12, "query_from": 199, "query_to": 210, "target_from": 1979, "target_to": 1990, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " ", "target_secstr": " ", "query_aln": "GRKTTTGTRKPR", "target_aln": "SRRSRTPSRRSR", "middle": "+R++ T++R++R", "computed_K_ungapped": "0.0737", "computed_lambda_ungapped": "0.8988", "estimated_K_gapped": "0.0009", "estimated_lambda_gapped": "0.4518", "entropy": 0.1892, "expected_score": -0.1671, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q6GZU4|032R_FRG3G Uncharacterized protein 032R OS=Frog virus 3 (isolate Goorha) OX=654924 GN=FV3-032R PE=4 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 629, "target_eno": 1.0, "alignment": { "score": 37.59, "bit_score": 32.5, "evalue": 6.2, "pvalue": 1, "n_identities": 3, "n_positives": 3, "n_gaps": 0, "aln_length": 9, "query_from": 108, "query_to": 116, "target_from": 351, "target_to": 359, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": "hhhhhh ", "target_secstr": "hhh ", "query_aln": "QEERIVSFQ", "target_aln": "IVERGYVSQ", "middle": "+ ER ++ Q", "computed_K_ungapped": "0.0688", "computed_lambda_ungapped": "0.7749", "estimated_K_gapped": "0.0009", "estimated_lambda_gapped": "0.3895", "entropy": 0.1394, "expected_score": -0.1488, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q8NEE8|TTC16_HUMAN Tetratricopeptide repeat protein 16 OS=Homo sapiens OX=9606 GN=TTC16 PE=2 SV=2", "query_length": 262, "query_eno": 2.0, "target_length": 873, "target_eno": 3.0, "alignment": { "score": 36.14, "bit_score": 32.4, "evalue": 6.6, "pvalue": 1, "n_identities": 15, "n_positives": 24, "n_gaps": 1, "aln_length": 60, "query_from": 172, "query_to": 231, "target_from": 651, "target_to": 709, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " eeee eeeeee ", "target_secstr": " hhhh ", "query_aln": "LSTPEKYRGRDAPTIEAITRPIQVAQGGRKTTTGTRKPRGLEPRRRKVKTTVVYGRRRSK", "target_aln": "LKTQSSDSGNNREALSHGPRKIKATQGQRQSLSKTEPTQSQRRNSSKTKATI-HKRNSSK", "middle": "L T ++ G++ ++ +R I+++QG+R++ + T+ +++ + + K+K T +R++SK", "computed_K_ungapped": "0.0673", "computed_lambda_ungapped": "0.9009", "estimated_K_gapped": "0.0009", "estimated_lambda_gapped": "0.4529", "entropy": 0.1278, "expected_score": -0.1213, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|P0CM96|CWC22_CRYNJ Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 \/ ATCC MYA-565) OX=214684 GN=CWC22 PE=3 SV=1", "query_length": 262, "query_eno": 2.0, "target_length": 831, "target_eno": 3.0, "alignment": { "score": 35.47, "bit_score": 32.1, "evalue": 8.3, "pvalue": 1, "n_identities": 1, "n_positives": 3, "n_gaps": 0, "aln_length": 6, "query_from": 43, "query_to": 48, "target_from": 376, "target_to": 381, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " eee", "target_secstr": " eeeee", "query_aln": "IKKHVL", "target_aln": "QITHRV", "middle": "+ +H +", "computed_K_ungapped": "0.0781", "computed_lambda_ungapped": "0.8559", "estimated_K_gapped": "0.0010", "estimated_lambda_gapped": "0.4302", "entropy": 0.1192, "expected_score": -0.1268, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q9UQ35|SRRM2_HUMAN Serine\/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2", "query_length": 262, "query_eno": 2.0, "target_length": 2752, "target_eno": 1.0, "alignment": { "score": 38.43, "bit_score": 32.0, "evalue": 8.5, "pvalue": 1, "n_identities": 3, "n_positives": 10, "n_gaps": 0, "aln_length": 19, "query_from": 85, "query_to": 103, "target_from": 1343, "target_to": 1361, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " eeee hh", "target_secstr": " ", "query_aln": "VPPGYLIQHEEAEEIPLGD", "target_aln": "MNTGFSSEVKEDLNGPFLN", "middle": "++ G++ ++E+ + P++ ", "computed_K_ungapped": "0.0544", "computed_lambda_ungapped": "0.6897", "estimated_K_gapped": "0.0007", "estimated_lambda_gapped": "0.3467", "entropy": 0.0920, "expected_score": -0.1111, "min_score": -2, "max_score": 4 } }}, {"hit_record": { "target_description": "sp|Q8BTI8|SRRM2_MOUSE Serine\/arginine repetitive matrix protein 2 OS=Mus musculus OX=10090 GN=Srrm2 PE=1 SV=3", "query_length": 262, "query_eno": 2.0, "target_length": 2703, "target_eno": 1.0, "alignment": { "score": 37.78, "bit_score": 31.8, "evalue": 9.9, "pvalue": 1, "n_identities": 3, "n_positives": 0, "n_gaps": 0, "aln_length": 5, "query_from": 16, "query_to": 20, "target_from": 1146, "target_to": 1150, "query_secstr_available": 1, "target_secstr_available": 1, "query_secstr": " ", "target_secstr": " ", "query_aln": "PDDFF", "target_aln": "PRDKF", "middle": "P D F", "computed_K_ungapped": "0.0545", "computed_lambda_ungapped": "0.7059", "estimated_K_gapped": "0.0007", "estimated_lambda_gapped": "0.3548", "entropy": 0.0969, "expected_score": -0.1139, "min_score": -2, "max_score": 4 } }} ], "search_statistics": { "reference_K_ungapped": 0.1158, "reference_lambda_ungapped": 1.1163, "reference_K_gapped": 0.0015, "reference_lambda_gapped": 0.5611, "query_length": 262, "database_size": 143238575, "effective_query_length": 262, "effective_database_size": 143238575, "effective_search_space": 37528506368 } }}